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Speleology in Kazakhstan

Shakalov on 04 Jul, 2018
Hello everyone!   I pleased to invite you to the official site of Central Asian Karstic-Speleological commission ("Kaspeko")   There, we regularly publish reports about our expeditions, articles and reports on speleotopics, lecture course for instructors, photos etc. ...

New publications on hypogene speleogenesis

Klimchouk on 26 Mar, 2012
Dear Colleagues, This is to draw your attention to several recent publications added to KarstBase, relevant to hypogenic karst/speleogenesis: Corrosion of limestone tablets in sulfidic ground-water: measurements and speleogenetic implications Galdenzi,

The deepest terrestrial animal

Klimchouk on 23 Feb, 2012
A recent publication of Spanish researchers describes the biology of Krubera Cave, including the deepest terrestrial animal ever found: Jordana, Rafael; Baquero, Enrique; Reboleira, Sofía and Sendra, Alberto. ...

Caves - landscapes without light

akop on 05 Feb, 2012
Exhibition dedicated to caves is taking place in the Vienna Natural History Museum   The exhibition at the Natural History Museum presents the surprising variety of caves and cave formations such as stalactites and various crystals. ...

Did you know?

That neoteny is the condition of retaining larval form and behavior even as a mature individual. certain salamanders in particular are neotenic [23].?

Checkout all 2699 terms in the KarstBase Glossary of Karst and Cave Terms

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Featured articles from Cave & Karst Science Journals
Chemistry and Karst, White, William B.
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Evidence of a plate-wide tectonic pressure pulse provided by extensometric monitoring in the Balkan Mountains (Bulgaria), Briestensky, Milos; Rowberry, Matt; Stemberk, Josef; Stefanov, Petar; Vozar, Jozef; Sebela, Stanka; Petro, Lubomir; Bella, Pavel; Gaal, Ludovit; Ormukov, Cholponbek;
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Your search for thiothrix (Keyword) returned 7 results for the whole karstbase:
Chemoautotrophic microbial mats in submarine caves with hydrothermal sulphidic springs at Cape Palinuro, Italy, 1998, Mattison R. G. , Abbiati M. , Dando P. R. , Fitzsimons M. F. , Pratt S. M. , Southward A. J. , Southward E. C. ,
Observations were made on the distribution, morphology, and chemoautotrophic potential of microbial mats found in submarine caves of dolomitized limestone which contain hydrothermal sulphidic springs at Cape Palinuro, Italy. The distribution of microbial mats is closely associated with the flow of hydrothermal fluid from springs whose activity is intermittent and initiated during low tide. Fluid emitted from active springs in the Grotta Azzurra has a maximum temperature of 24.6 degrees C and is enriched in dissolved sulfur species (H2S, S2O32-) and dissolved gases (CH4, CO2). However, it is depleted in NaCl and dissolved O-2, in comparison with ambient seawater. This fluid is less dense and rises above the ambient seawater to form a visible thermocline and chemocline separating both lavers in the submarine caves. Microbial mats were attached to rock surfaces immersed in fluid above the chemocline and were differentiated into brown and white forms. Brown mats were composed of trichomes (4.2 0.1 mu m and 20.3 0.7 mu m in diameter) resembling the calcareous rock-boring cyanobacterium Schizothrix and clusters (6 mu m in diameter) of sarcina-like cells morphologically resembling methanogenic bacteria. White mats were composed of attached filaments resembling Beggiatoa (19.3 0.5 mu m, 39.0 1.7 mu m, and 66.9 3.3 mu m in diameter) and Thiothrix (4.2 0.2 mu m in diameter). Flexibacteria (<1 mu m in diameter) were common to both mats. Beggiatoa-like filaments were morphologically similar to those attached to rocks and the byssal threads of mussels from Lucky Strike vent field on the Mid-Atlantic Ridge, Morphological comparisons were also made with typical gliding Beggiatoa from shallow seeps in Eckernforder Bucht, Baltic Sea. White mats displayed chemoautotrophic fixation of CO2 under relatively well-oxygenated laboratory conditions (maximum rate 50.2 nmol CO2/mg dry wt/h) using internal S-0 or possibly S2O32- as electron donor. Photosynthesis may be limited in the Grotta Azzurra by insufficient illumination (6.3 x 10(-7) mu einsteins/cm(2)/s), with the possibility of Schizothrix living (at least in part) as a chemoheterotroph on while mats. Chemoautotrophic fixation of CO2 by white mats is proposed as a significant source of nutrition for benthic fauna in these caves, and has been estimated as contributing 50-70 mu mol CO2/m(2) of mat/min, as measured under laboratory conditions

Ecological assessment and geological significance of microbial communities from Cesspool Cave, Virginia, 2001, Engel As, Porter Ml, Kinkle Bk, Kane Tc,
Microbial mats from hydrogen sulfide-rich waters and cave-wall biofilms were investigated from Cesspool Cave, Virginia, to determine community composition and potential geomicrobiological functioning of acid-producing bacteria. Rates of microbial mat chemoautotrophic productivity were estimated using [C-14]-bicarbonate incorporations and microbial heterotrophy was determined using [C-14]-leucine incubations. Chemoautotrophic fixation was measured at 30.4 12.0 ng C mg dry wt(1) h(1), whereas heterotrophic productivity was significantly less at 0.17 0.02 ng C mg dry wt(1) h(1). The carbon to nitrogen ratios of the microbial mats averaged 13.5, indicating that the mats are not a high quality food source for higher trophic levels. Ribosomal RNA-based methods were used to examine bacterial diversity in the microbial mats, revealing the presence of at least five strains of bacteria. The identity of some of the strains could be resolved to the genus Thiothrix and the Flexibacter-Cytophaga-Bacteriodes phylum, and the identity of the remaining strains was to either the Helicobacter or Thiovulum group. Two of 10 sulfur-oxidizing, chemoautotrophic pure cultures of Thiobacillus spp. (syn. Thiomonas gen. nov.) demonstrated the ability to corrode calcium carbonate, suggesting that the colonization and metabolic activity of these bacteria may be enhancing cave enlargement

Bacterial diversity and ecosystem function of filamentous microbial mats from aphotic (cave) sulfidic springs dominated by chemolithoautotrophic 'Epsilonproteobacteria', 2004, Engel As, Porter Ml, Stern La, Quinlan S, Bennett Pc,
Filamentous microbial mats from three aphotic sulfidic springs in Lower Kane Cave. Wyoming. were assessed with regard to bacterial diversity, community structure, and ecosystem function using a 16S rDNA-based phylogenetic approach combined with elemental content and stable carbon isotope ratio analyses. The most prevalent mat morphotype consisted of while filament bundles, with low C:N ratios (3.5-5.4) and high sulfur content (16.1-51.2%). White filament bundles and two other mat morphotypes organic carbon isotope values (mean delta(13)C = -34.7parts per thousand: 1sigma = 3.6) consistent with chemolithoautotrophic carbon fixation from a dissolved inorganic carbon reservoir (cave water, mean delta(13)C = -7.47parts per thousand for two springs, n = 8). Bacterial diversity was as low overall in the clone libraries, and the most abundant taxonomic group was affiliated with the 'Epsilonproteobacteria' (68%) with other bacterial sequences affiliated with Gammaproteobacteria (12.2%), Betaproteobacteria (11.7%), Deltaproteobacteria (0.8%), and the Acidobacterium (5.6%) and Bacteriodetes/Chlorobi (1.7%) divisions. Six distinct epsilonproteobacterial taxonomic groups were identified from the microbial mats. Epsilonproteobacterial and bacterial group abundances and community structure shifted front the spring orifices downstream. corresponding to changes in dissolved sulfide and oxygen concentrations and metabolic requirements of certain bacterial groups. Most of the clone sequences for epsilonproteobacterial groups were retrieved from areas with high sulfide and low oxygen concentrations, whereas Thiothrix spp. and Thiobacillus spp. had higher retrieved clone abundances where conditions of low sulfide and high oxygen concentrations were measured. Genetic and metabolic diversity among the 'Epsilonproteobacteria' maximizes overall cave ecosystem function, and these organisms play a significant role in providing chemolithoautotrophic energy to the otherwise nutrient-poor cave habitat. Our results demonstrate that sulfur cycling supports subsurface ecosystem through chemolithoautotrophy and expand the evolutionary and ecological views of 'Epsilonproteobacteria' in terrestrial habitats. (C) 2004 Federation of European Microbiological Societies. Published by Elsevier BY. All rights reserved

Dominant Microbial Populations in Limestone-Corroding Stream Biofilms, Frasassi Cave System, Italy, 2006, Macalady Jennifer L. , Lyon Ezra H. , Koffman Bess, Albertson Lindsey K. , Meyer Katja, Galdenzi Sandro, Mariani Sandro,
Waters from an extensive sulfide-rich aquifer emerge in the Frasassi cave system, where they mix with oxygen-rich percolating water and cave air over a large surface area. The actively forming cave complex hosts a microbial community, including conspicuous white biofilms coating surfaces in cave streams, that is isolated from surface sources of C and N. Two distinct biofilm morphologies were observed in the streams over a 4-year period. Bacterial 16S rDNA libraries were constructed from samples of each biofilm type collected from Grotta Sulfurea in 2002. {beta}-, {gamma}-, {delta}-, and {varepsilon}-proteobacteria in sulfur-cycling clades accounted for [≥]75% of clones in both biofilms. Sulfate-reducing and sulfur-disproportionating {delta}-proteobacterial sequences in the clone libraries were abundant and diverse (34% of phylotypes). Biofilm samples of both types were later collected at the same location and at an additional sample site in Ramo Sulfureo and examined, using fluorescence in situ hybridization (FISH). The biomass of all six stream biofilms was dominated by filamentous {gamma}-proteobacteria with Beggiatoa-like and/or Thiothrix-like cells containing abundant sulfur inclusions. The biomass of {varepsilon}-proteobacteria detected using FISH was consistently small, ranging from 0 to less than 15% of the total biomass. Our results suggest that S cycling within the stream biofilms is an important feature of the cave biogeochemistry. Such cycling represents positive biological feedback to sulfuric acid speleogenesis and related processes that create subsurface porosity in carbonate rocks

Niche differentiation among sulfur-oxidizing bacterial populations in cave waters, 2008, Jennifer L Macalady, Sharmishtha Dattagupta, Irene Schaperdoth, Daniel S Jones, Greg K Druschel And Danielle Eastman
The sulfidic Frasassi cave system affords a unique opportunity to investigate niche relationships among sulfur-oxidizing bacteria, including epsilonproteobacterial clades with no cultivated representatives. Oxygen and sulfide concentrations in the cave waters range over more than two orders of magnitude as a result of seasonally and spatially variable dilution of the sulfidic groundwater. A full-cycle rRNA approach was used to quantify dominant populations in biofilms collected in both diluted and undiluted zones. Sulfide concentration profiles within biofilms were obtained in situ using microelectrode voltammetry. Populations in rock-attached streamers depended on the sulfide/oxygen supply ratio of bulk water (r¼0.97; Po0.0001). Filamentous epsilonproteobacteria dominated at high sulfide to oxygen ratios (4150), whereas Thiothrix dominated at low ratios (o75). In contrast, Beggiatoa was the dominant group in biofilms at the sediment?water interface regardless of sulfide and oxygen concentrations or supply ratio. Our results highlight the versatility and ecological success of Beggiatoa in diffusion-controlled niches, and demonstrate that high sulfide/oxygen ratios in turbulent water are important for the growth of filamentous epsilonproteobacteria.

A recently evolved symbiosis between chemoautotrophic bacteria and a cave-dwelling amphipod, 2009, Dattagupta, S. , Schaperdoth, I. , Montanari, A. , Mariani, S. , Kita, N. , Valley, J. W. And Macalady, J. L.
Symbioses involving animals and chemoautotrophic bacteria form the foundation of entire ecosystems at deep-sea hydrothermal vents and cold seeps, but have so far not been reported in terrestrial or freshwater environments. A rare example of a terrestrial ecosystem sustained by chemoautotrophy is found within the sulfide-rich Frasassi limestone cave complex of central Italy. In this study, we report the discovery of abundant filamentous bacteria on the exoskeleton of Niphargus ictus, a macroinvertebrate endemic to Frasassi. Using 16S rDNA sequencing and fluorescence in situ hybridization (FISH), we show that N. ictus throughout the large cave complex are colonized by a single phylotype of bacteria in the sulfur-oxidizing clade Thiothrix. The epibiont phylotype is distinct from Thiothrix phylotypes that form conspicuous biofilms in the cave streams and pools inhabited by N. ictus. Using a combination of 13C labeling, FISH, and secondary ion mass spectrometry (SIMS), we show that the epibiotic Thiothrix are autotrophic, establishing the first known example of a non-marine chemoautotroph-animal symbiosis. Conditions supporting chemoautotrophy, and the N. ictus-Thiothrix association, likely commenced in the Frasassi cave complex between 350 000 and 1 million years ago. Therefore, the N. ictus-Thiothrix symbiosis is probably significantly younger than marine chemoautotrophic symbioses, many of which have been evolving for tens to hundreds of million years.

Exploring the sulfide tolerance of ectosymbiotic Niphargus amphipods from the Frasassi caves, central Italy, 2013, Bauermeister J. , Assig K. , Dattagupta S.

Two species of the crustacean amphipod genus Niphargus inhabit the sulfidic groundwaters of the Frasassi caves in central Italy, and both harbor filamentous, sulfide-oxidizing Thiothrix ectosymbionts. As sulfide is toxic to most aerobic organisms, it appeared possible that the ectosymbionts could help their Niphargus hosts with detoxification processes. In this study, mortality due to sulfide was compared between Niphargus individuals with ectosymbionts and individuals whose ectosymbionts had been killed by antibiotic treatment. Both Frasassi- dwelling Niphargus species revealed exceptionally high tolerances to sulfide compared to other amphipod species studied so far. Niphargus individuals without viable ectosymbionts tolerated sulfide levels exceeding those occurring in Frasassi cave waters. Thus, the amphipods may employ Thiothrix-independent mechanisms for sulfide resistance.

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